fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G23980 (ARF9)

Alias ARF9
TF Classification
FioreDBARF (Click to show phylogenetic tree)
RARTFARF / MONOPTEROS/ARF5
AtTFDBARF
PlnTFDBARF (v3.0), ARF (v1.0)
DATFARF
TAIR short description auxin response factor 9 (.1.2)
TAIR annotation Encodes auxin response factor 9 (ARF9). (.1.2)
Gene model
Gene model cDNA support
AT4G23980.1 35
AT4G23980.2 31
Entry clone (w/o stop) IE_07B07
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9734: signal transduction ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 2 10 12
soybean 1 3 7 11
rice 3 1 4
sorghum 2 1 3
physcomitrella
Total 1 10 19 30
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
EPSETIDLQSLEPAQEFW at 379/699 in rice Os001181 (Type II)
EPAMFRLFGVDLMKC at 525/699 in rice Os001181 (Type II)
KDDNYKLFGVSLFRN at 542/768 in poplar Pt010326 (Type III)
EPSETIDLQSLEPAQEFW at 379/699 in rice Os001180 (Type II)
EPAMFRLFGVDLMKC at 525/699 in rice Os001180 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> The work interrupted(07Feb)

          
Plasmid construction -> The work interrupted(07Feb)

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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