fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G03415 (ATDPB, DPB)

Alias ATDPB, DPB
TF Classification
FioreDBE2F_DP (Click to show phylogenetic tree)
RARTFE2F/DP
AtTFDB
PlnTFDBE2F-DP (v3.0), E2F-DP (v1.0)
DATFE2F-DP
TAIR short description Transcription factor DP (.1.2)
TAIR annotation Encodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost. (.1), Encodes a homolog of the animal DP protein. DP, in animals, forms a heterodimer with E2F and plays a central role in G1/S transition in the cell division cycle. DPB has been shown to interact with non phosphorylated E2Fc; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost. (.2)
Gene model
Gene model cDNA support
AT5G03415.1 23
AT5G03415.2 15
Entry clone (w/o stop) IE_04G02
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(P) 42023: other cellular processes ->DNA endoreduplication
(F) 46982: protein binding ->protein heterodimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5667: other intracellular components ->transcription factor complex
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6357: other cellular processes ->regulation of transcription from RNA polymerase II promoter
(P) 82: other cellular processes ->G1/S transition of mitotic cell cycle
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5028: 3'-TTGAGATCGTATTTGGGTTAA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 7 8
rice 1 1
sorghum 1 3 4
physcomitrella 1 3 4
Total 5 14 19
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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