fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G20730 (MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4)

Alias MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4
TF Classification
FioreDBARF (Click to show phylogenetic tree)
RARTFARF / NPH4/ARF7
AtTFDBARF
PlnTFDBARF (v3.0), ARF (v1.0)
DATFARF
TAIR short description MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3)
TAIR annotation Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin. (.1), Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin. (.2), Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin. (.3)
Gene model
Gene model cDNA support
AT5G20730.2 99
AT5G20730.3 93
AT5G20730.1 34
Entry clone (w/o stop) IE_05E10_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10311: developmental processes ->lateral root formation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 40008: other biological processes ->regulation of growth
(P) 45893: other metabolic processes ->positive regulation of transcription, DNA-templated
(P) 48366: developmental processes ->leaf development
(P) 48527: developmental processes ->lateral root development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9630: response to abiotic or biotic stimulus ->gravitropism
(P) 9638: response to abiotic or biotic stimulus ->phototropism
(P) 9723: other biological processes ->response to ethylene
(P) 9733: other biological processes ->response to auxin
(P) 9734: signal transduction ->auxin-activated signaling pathway
(P) 9785: other cellular processes ->blue light signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 15 16
soybean 1 26 27
rice 2 9 11
sorghum 1 8 9
physcomitrella 1 7 8
Total 6 65 71
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
DNSEQQLHLQLLQNLQ at 634/1047 in poplar Pt008477 (Type III)
QLSDQQLQLQLLQKLQ at 641/1191 in sorghum Sb034305 (Type III)
NPSEQQLHLQLLQKLQ at 641/1087 in soybean Gm035640 (Type III)
QLTDQQLQLQLLQKLQ at 656/991 in rice Os026273 (Type II)
NPSEQQLHLQLLQKLQ at 647/1091 in soybean Gm046014 (Type III)
QLSDQELQLQLLQKLQ at 646/1270 in sorghum Sb026752 (Type III)
QLSQSELQLQLLQKIQ at 550/952 in sorghum Sb003149 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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