Alias |
|
TF Classification |
|
TAIR short description |
C2H2 and C2HC zinc fingers superfamily protein (.1) |
TAIR annotation |
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G34370.1); Has 32454 Blast hits to 15503 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 30756; Fungi - 38; Plants - 696; Viruses - 0; Other Eukaryotes - 964 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
IE_04E07 |
External link |
|
Gene Ontology (GO) |
(P) 10044: other biological processes |
->response to aluminum ion |
(P) 10200: other biological processes |
->response to chitin |
(P) 10447: response to abiotic or biotic stimulus |
->response to acidic pH |
(F) 3676: nucleic acid binding |
->nucleic acid binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 46872: other binding |
->metal ion binding |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: transcription,DNA-dependent |
->regulation of transcription, DNA-templated |
|
miRNA/tasiRNA |
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
1 |
|
|
|
1 |
soybean |
1 |
|
2 |
|
3 |
rice |
1 |
|
|
|
1 |
sorghum |
|
1 |
|
|
1 |
physcomitrella |
|
|
|
|
|
Total |
3 |
1 |
2 |
|
6 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
|
CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
Comment |
|