fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G66320 (GATA5)

Alias GATA5
TF Classification
FioreDBGATA (Click to show phylogenetic tree)
RARTFC2C2(Zn) / GATA
AtTFDBC2C2-Gata
PlnTFDBC2C2-GATA (v3.0), C2C2-GATA (v1.0)
DATFC2C2-GATA
TAIR short description GATA transcription factor 5 (.1.2)
TAIR annotation Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate. (.1.2)
Gene model
Gene model cDNA support
AT5G66320.1 48
AT5G66320.2 36
Entry clone (w/o stop) RE_01G06
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 1085: protein binding ->RNA polymerase II transcription factor binding
(F) 1228: transcription factor activity ->transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
(P) 30154: other cellular processes ->cell differentiation
(F) 3682: other binding ->chromatin binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(C) 5667: other intracellular components ->transcription factor complex
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
(F) 977: nucleic acid binding ->RNA polymerase II regulatory region sequence-specific DNA binding
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5021: 3'-GAGAAAAGAAGAAGAAGAAG-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1
rice
sorghum
physcomitrella
Total 2 1 3
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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