fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G62360 (WAM1, WAM, SHL, BUM1, STM)

Alias WAM1, WAM, SHL, BUM1, STM
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / SHOOTMERISTEMLESS
AtTFDBHomeobox / KNOX I
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
TAIR annotation Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia. (.1)
Gene model
Gene model cDNA support
AT1G62360.1 47
Entry clone (w/o stop) RE_01G08_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 15630: other intracellular components ->microtubule cytoskeleton
(P) 19827: other biological processes ->stem cell population maintenance
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 3723: DNA or RNA binding ->RNA binding
(F) 42803: protein binding ->protein homodimerization activity
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 48440: developmental processes ->carpel development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9691: other metabolic processes ->cytokinin biosynthetic process
(P) 9934: other biological processes ->regulation of meristem structural organization
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 4 6 11
rice 1 3 4
sorghum 1 5 6
physcomitrella
Total 2 6 18 26
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
RPAAPQLTLRLATVTR at 121/482 in sorghum Sb020144 (Type III)
SVSGQSLSLSLFPGKD at 183/341 in poplar Pt042564 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        slender cotyledon. shoot meristem-less (frequency = 100%)

         rough surface leaf (A20402), 
         pale green leaf (A20402), 
         meristem-less (direct input), 
         abnormal seedling (direct input), 
         abnormal shaped leaf (A20402), 
         sterile or low fertility (A20402)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50069
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, 2 lines 
           no phenotype 
            
          

         

         

          Comment