fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G01780 (PLIM2b)

Alias PLIM2b
TF Classification
FioreDBLIM (Click to show phylogenetic tree)
RARTFLIM-domain
AtTFDB
PlnTFDBLIM (v3.0), LIM (v1.0)
DATFLIM
TAIR short description PLIM2b, GATA type zinc finger transcription factor family protein (.1)
TAIR annotation GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G45800.1); Has 4819 Blast hits to 3002 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 4032; Fungi - 22; Plants - 446; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G01780.1 17
Entry clone (w/o stop) RE_1145_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 15629: other intracellular components ->actin cytoskeleton
(F) 51015: protein binding ->actin filament binding
(P) 51017: other cellular processes ->actin filament bundle assembly
(C) 5737: other cytoplasmic components ->cytoplasm
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 9 11
soybean 2 22 24
rice 2 3 5
sorghum 1 3 4
physcomitrella 1 2 3
Total 1 7 39 47
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID563
           Torenia
           35S:AtCDS-SRDX
           2007-07-06
           flower bulk, 4 lines 
           no phenotype 
            
          

         

         

          Comment