Alias
TF Classification
TAIR short description
Homeodomain-like superfamily protein (.1)
TAIR annotation
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G02060.1); Has 1612 Blast hits to 1608 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1598; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). (.1)
Gene model
Entry clone (w/o stop)
RE_0841_x
External link
Gene Ontology (GO)
(F) 3677: DNA or RNA binding
->DNA binding
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus
->nucleus
(P) 6351: transcription,DNA-dependent
->transcription, DNA-templated
(P) 6355: other metabolic processes
->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
soybean
1
1
rice
1
1
sorghum
physcomitrella
Total
3
3
Repression motif
HEEEEELSLSL SLNHP at 191/255 in AT1G14600.1 ASSKIDLNLNL SFSLL at 242/255 in AT1G14600.1
Repression motif in putative orthologs
PLEKCSLSLSL GPDPK at 247/306 in rice Os018473 (Type Ib)
AEVEDELSLSL TLPNP at 244/303 in soybean Gm054299 (Type Ib)
LKERINLDLSL ALCGN at 293/303 in soybean Gm054299 (Type Ib)
EPVDCELSLAL SLPQP at 126/185 in poplar Pt035066 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment