fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G27650 (ATU2AF35A)

Alias ATU2AF35A
TF Classification
FioreDBC3HZnF (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBC3H (v3.0), C3H (v1.0)
DATFC3H
TAIR short description U2 snRNP auxiliary factor small subunit, putative (.1.2)
TAIR annotation U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. (.1), U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. (.2)
Gene model
Gene model cDNA support
AT1G27650.1 87
AT1G27650.2 51
Entry clone (w/o stop) RE_03H11_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 16607: nucleus ->nuclear speck
(F) 30628: DNA or RNA binding ->pre-mRNA 3-splice site binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3723: DNA or RNA binding ->RNA binding
(P) 398: other metabolic processes ->mRNA splicing, via spliceosome
(F) 46872: other binding ->metal ion binding
(P) 48573: developmental processes ->photoperiodism, flowering
(C) 5634: nucleus ->nucleus
(C) 5681: nucleus ->spliceosomal complex
(C) 89701: other intracellular components ->U2AF
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 3 4 7
soybean 1 2 4 7
rice 1 3 4
sorghum 1 2 3
physcomitrella 1 3 4
Total 3 11 11 25
Repression motif
Repression motif
in putative orthologs
SPGFKLLLFRFLLFS at 95/876 in sorghum Sb023474 (Type II)

        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants

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