fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G28520 (ATVOZ1, VOZ1)

Alias ATVOZ1, VOZ1
TF Classification
FioreDBVOZ (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBVOZ (v3.0), VOZ (v1.0)
DATFVOZ
TAIR short description vascular plant one zinc finger protein (.1.2)
TAIR annotation vascular plant one zinc finger protein (VOZ1); BEST Arabidopsis thaliana protein match is: vascular plant one zinc finger protein 2 (TAIR:AT2G42400.1); Has 77 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G28520.1 68
AT1G28520.2 47
Entry clone (w/o stop) RE_1195_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45893: other metabolic processes ->positive regulation of transcription, DNA-templated
(F) 46872: other binding ->metal ion binding
(P) 48574: response to abiotic or biotic stimulus ->long-day photoperiodism, flowering
(P) 48578: response to abiotic or biotic stimulus ->positive regulation of long-day photoperiodism, flowering
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 9408: response to stress ->response to heat
(P) 9414: response to stress ->response to water deprivation
(P) 9585: other cellular processes ->red, far-red light phototransduction
(P) 9631: response to abiotic or biotic stimulus ->cold acclimation
(P) 9816: response to stress ->defense response to bacterium, incompatible interaction
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 6 7
rice 1 1
sorghum 1 1 2
physcomitrella 1 2 3
Total 5 12 17
Repression motif 
ACALYRLELKLVDGKK at 389/486 in AT1G28520.1
ACALYRLELKLVDGKK at 389/486 in AT1G28520.2
Repression motif
in putative orthologs		 
GCALYRLELKLVDKKK at 418/479 in soybean Gm033482 (Type III)
SSSSPRLRLRLRLRPQ at 153/666 in sorghum Sb025812 (Type II)
ACALYRLELKLVDGKK at 384/477 in soybean Gm018952 (Type III)
GCALYRLELKLVDKKK at 401/461 in soybean Gm016496 (Type III)
ACALYRLELKLVDGKK at 384/477 in soybean Gm018953 (Type II)
ARALYRLELKLVDGKK at 381/466 in soybean Gm027022 (Type III)
VCALYRLELKLVDGKK at 326/376 in soybean Gm036086 (Type III)
LCALYRLELKLANGKR at 385/438 in poplar Pt014162 (Type III)
ACALYRLELKLVDGKK at 384/478 in soybean Gm036318 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment