fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G66140 (ZFP4)

Alias ZFP4
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description zinc finger protein 4 (.1)
TAIR annotation Encodes a zinc finger protein containing only a single zinc finger. (.1)
Gene model
Gene model cDNA support
AT1G66140.1 37
Entry clone (w/o stop) IE_0075
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 19760: other cellular processes ->glucosinolate metabolic process
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
(P) 9738: signal transduction ->abscisic acid-activated signaling pathway
(P) 9788: signal transduction ->negative regulation of abscisic acid-activated signaling pathway
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5012: 3'-CCTTGTGTTCATCGTCATTTT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 3 4
rice
sorghum
physcomitrella
Total 2 5 7
Repression motif 
DYKPISLNLSLSFNNN at 34/260 in AT1G66140.1
ESSLPDLTLKL at 254/260 in AT1G66140.1
Repression motif
in putative orthologs		 
NSDAISLDLSLNFKNS at 61/257 in soybean Gm004974 (Type II)
DNSTPDLTLKL at 252/257 in soybean Gm004974 (Type II)
NSDAISLDLSLNFKNS at 61/257 in soybean Gm004975 (Type Ia)
DNSTPDLTLKL at 252/257 in soybean Gm004975 (Type Ia)
NSDAISLDLSLNFKNS at 61/257 in soybean Gm040511 (Type II)
ENSTPDLTLKL at 252/257 in soybean Gm040511 (Type II)
NSDAISLDLSLNFKNS at 61/257 in soybean Gm040510 (Type II)
ENSTPDLTLKL at 252/257 in soybean Gm040510 (Type II)
GSETVSLDLKLCFNDD at 61/258 in poplar Pt004335 (Type II)
DDSAPDLTLKL at 253/258 in poplar Pt004335 (Type II)
SAETVSLDLKLCFNDD at 38/235 in poplar Pt004336 (Type II)
DDSAPDLTLKL at 230/235 in poplar Pt004336 (Type II)
GSEMVSLDLTLCFNND at 61/258 in poplar Pt020469 (Type Ia)
DDSAPDLTLKL at 253/258 in poplar Pt020469 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment