fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G66230 (ATMYB20)

Alias ATMYB20
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / GL1
AtTFDBMYB / R2R3-MYBs
PlnTFDBMYB (v3.0), MYB (v1.0)
DATFMYB
TAIR short description myb domain protein 20 (.1)
TAIR annotation Encodes a putative transcription factor (MYB20). (.1)
Gene model
Gene model cDNA support
AT1G66230.1 14
Entry clone (w/o stop) RE_02G07
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 1046: nucleic acid binding ->core promoter sequence-specific DNA binding
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(P) 1901002: response to stress ->positive regulation of response to salt stress
(P) 2000652: other cellular processes ->regulation of secondary cell wall biogenesis
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(P) 45892: other metabolic processes ->negative regulation of transcription, DNA-templated
(C) 5634: nucleus ->nucleus
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 6357: other metabolic processes ->regulation of transcription from RNA polymerase II promoter
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR858: 3'-TTCCAGCTTGTCTGTTGCTTT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 46 47
soybean 1 3 57 61
rice 1 2 22 25
sorghum 1 3 17 21
physcomitrella 2 13 15
Total 3 11 155 169
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
LERCPDLNLELTISPP at 170/246 in soybean Gm030520 (Type III)
QERCPDLNLELRISLP at 186/268 in poplar Pt018632 (Type III)
RLLSFSLSLSLFIVSP at 14/367 in soybean Gm025799 (Type III)
VPRCPDLNLDLCISPP at 216/452 in sorghum Sb031046 (Type III)
PPKCPDLNLDLCISPP at 161/243 in rice Os032444 (Type III)
LERCPDLNLELTISPP at 140/210 in soybean Gm008427 (Type III)
LERCPDLNLELTISPP at 173/253 in soybean Gm032581 (Type III)
VHPNHKLNLELSIGLP at 220/318 in poplar Pt012921 (Type III)
LLLLHQLQLQLSIIIA at 182/382 in soybean Gm035059 (Type III)
VVGGIDLNLSLSPPTS at 196/215 in sorghum Sb016715 (Type III)
SFPHHQLNLDLSIGLP at 203/301 in soybean Gm015390 (Type III)
PLKCPDLNLDLCISLP at 189/251 in rice Os034636 (Type III)
SVPHHQLNLDLSIGLP at 210/302 in soybean Gm010386 (Type III)
GEKCQELNLELRICPP at 168/245 in poplar Pt000910 (Type III)
PTSLPTLILFR at 239/244 in poplar Pt003372 (Type III)
HERCPDLNLELTISPP at 157/235 in soybean Gm013657 (Type III)
APRCPDLNLDLDLDLS at 205/287 in rice Os004951 (Type III)
EPRCPDLNLELSVGPT at 197/260 in rice Os021729 (Type III)
EPRCPDLNLELSVGPT at 197/260 in rice Os021728 (Type III)
APRCPDLNLDLDLSVG at 194/269 in sorghum Sb009095 (Type III)
QERCPDLNLELGISLP at 189/271 in poplar Pt021128 (Type III)
QERCPDLNLELRISLP at 186/266 in poplar Pt018633 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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