Alias |
TFIIIA |
TF Classification |
|
TAIR short description |
transcription factor IIIA (.1.2) |
TAIR annotation |
Encodes a transcriptional factor TFIIIA required for transcription of 5S rRNA gene. 5S rRNA is the smallest constituent of the ribosome. Work on one of the gene models AT1G72050.2 showed that it encodes a protein with nine Cys(2)-His(2)-type zinc fingers, a characteristic feature of TFIIIA proteins. AT1G72050.2 also contains a 23 amino acid spacer between fingers 1 and 2, a 66 amino acid spacer between fingers 4 and 5, and a 50 amino acid non-finger C-terminal tail. in vitro assay demonstrated that AT1g72050.2 binds to 5S rDNA and efficiently stimulates the transcription of 5S rRNA. AT1g72050.2 also binds to 5S rRNA in vitro. AT1g72050.2 is located at several nuclear foci including the nucleolus and is absent from the cytoplasm. (.1), Encodes a transcriptional factor TFIIIA required for transcription of 5S rRNA gene. 5S rRNA is the smallest constituent of the ribosome. Work on one of the gene models AT1G72050.2 showed that it encodes a protein with nine Cys(2)-His(2)-type zinc fingers, a characteristic feature of TFIIIA proteins. AT1G72050.2 also contains a 23 amino acid spacer between fingers 1 and 2, a 66 amino acid spacer between fingers 4 and 5, and a 50 amino acid non-finger C-terminal tail. in vitro assay demonstrated that AT1g72050.2 binds to 5S rDNA and efficiently stimulates the transcription of 5S rRNA. AT1g72050.2 also binds to 5S rRNA in vitro. AT1g72050.2 is located at several nuclear foci including the nucleolus and is absent from the cytoplasm. (.2) |
Gene model |
|
Entry clone (w/o stop) |
RE_03D10_x |
External link |
|
Gene Ontology (GO) |
(F) 3676: nucleic acid binding |
->nucleic acid binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 3723: DNA or RNA binding |
->RNA binding |
(F) 46872: other binding |
->metal ion binding |
(C) 5634: nucleus |
->nucleus |
(C) 5730: nucleus |
->nucleolus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: other cellular processes |
->regulation of transcription, DNA-templated |
(P) 7275: developmental processes |
->multicellular organism development |
(F) 80084: DNA or RNA binding |
->5S rDNA binding |
(F) 8097: DNA or RNA binding |
->5S rRNA binding |
(F) 8270: other binding |
->zinc ion binding |
|
miRNA/tasiRNA |
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
|
1 |
2 |
3 |
soybean |
|
|
1 |
|
1 |
rice |
|
|
2 |
|
2 |
sorghum |
|
|
1 |
|
1 |
physcomitrella |
|
|
|
|
|
Total |
|
|
5 |
2 |
7 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> not_yet |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
|
CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
Comment |
|