fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G30420 (ETC2)

Alias ETC2
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / CAPRICE
AtTFDB
PlnTFDBMYB-related (v3.0), MYB-related (v1.0)
DATFMYB-related
TAIR short description ENHANCER OF TRY AND CPC 2, Homeodomain-like superfamily protein (.1)
TAIR annotation In a tandem repeat with AT2G30424 and AT2G30432 (.1)
Gene model
Gene model cDNA support
AT2G30420.1 19
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(P) 1900033: developmental processes ->negative regulation of trichome patterning
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(P) 48629: other cellular processes ->trichome patterning
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6357: other cellular processes ->regulation of transcription from RNA polymerase II promoter
(P) 80147: developmental processes ->root hair cell development
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 1
rice
sorghum
physcomitrella
Total 2 3 5
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        No

         glabra (direct input)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         glabra 
         (A20315-35)
         

         
         

         glabra 
         (A20316-101)
         

         
         

         glabra 
         (A20734-21)
         

         glabra 
         (A20735-66)
         

         glabra 
         (A20734-24)
         

         glabra 
         (A20737-154)
         

         glabra 
         (A20734-15)
         

         glabra, 
         too large leaf 
         (A20735-93)
         

         glabra, 
         hyponastic leaf 
         (A20734-49)
         

         slow growth 
         (A20317-130)
         

         
         


        		
       

       

        Phenotype in ornamental plants


        
         

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