Alias
TF Classification
TAIR short description
Homeodomain-like superfamily protein (.1)
TAIR annotation
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT2G38300.1); Has 1902 Blast hits to 1885 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 17; Plants - 1623; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink). (.1)
Gene model
Entry clone (w/o stop)
IE_0070
External link
Gene Ontology (GO)
(F) 3677: DNA or RNA binding
->DNA binding
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus
->nucleus
(P) 6351: transcription,DNA-dependent
->transcription, DNA-templated
(P) 6355: other metabolic processes
->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
soybean
rice
sorghum
1
1
physcomitrella
1
1
Total
3
3
Repression motif
NKSDQDLDLSL SLKVP at 332/410 in AT2G40260.1 HQDIKSLSLSL SSSGS at 368/410 in AT2G40260.1
Repression motif in putative orthologs
HHDPLDLELAL DIGPS at 275/364 in sorghum Sb016391 (Type Ib)
ATDDTQLSLSL LPSPS at 320/364 in sorghum Sb016391 (Type Ib)
LDSDCNLDLNL ALKRS at 305/366 in poplar Pt035782 (Type Ib)
ARMANTLDLTL at 361/366 in poplar Pt035782 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment