Alias |
bHLH130 |
TF Classification |
FioreDB | bHLH (Click to show phylogenetic tree) |
RARTF | bHLH / TRANSPARENT TESTA8 |
AtTFDB | bHLH |
PlnTFDB | bHLH (v3.0), bHLH (v1.0) |
DATF | bHLH |
|
TAIR short description |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) |
TAIR annotation |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G51140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_0232_x |
External link |
|
Gene Ontology (GO) |
(F) 1046: nucleic acid binding |
->core promoter sequence-specific DNA binding |
(F) 1228: transcription factor activity |
->transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 46983: protein binding |
->protein dimerization activity |
(P) 48573: response to abiotic or biotic stimulus |
->photoperiodism, flowering |
(C) 5634: nucleus |
->nucleus |
(P) 6355: other cellular processes |
->regulation of transcription, DNA-templated |
(P) 6366: transcription,DNA-dependent |
->transcription from RNA polymerase II promoter |
|
miRNA/tasiRNA |
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
1 |
|
1 |
|
2 |
soybean |
|
1 |
|
|
1 |
rice |
|
1 |
|
|
1 |
sorghum |
|
1 |
|
|
1 |
physcomitrella |
|
|
|
|
|
Total |
1 |
3 |
1 |
|
5 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> not_yet |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
|
CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
Comment |
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