fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G42400 (ATVOZ2, VOZ2)

Alias ATVOZ2, VOZ2
TF Classification
FioreDBVOZ (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBVOZ (v3.0), VOZ (v1.0)
DATFVOZ
TAIR short description vascular plant one zinc finger protein 2 (.1)
TAIR annotation vascular plant one zinc finger protein 2 (VOZ2); BEST Arabidopsis thaliana protein match is: vascular plant one zinc finger protein (TAIR:AT1G28520.2); Has 87 Blast hits to 82 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G42400.1 43
Entry clone (w/o stop) RE_1213_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45893: transcription,DNA-dependent ->positive regulation of transcription, DNA-templated
(F) 46872: other binding ->metal ion binding
(P) 48574: response to abiotic or biotic stimulus ->long-day photoperiodism, flowering
(P) 48578: response to abiotic or biotic stimulus ->positive regulation of long-day photoperiodism, flowering
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 9585: other cellular processes ->red, far-red light phototransduction
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 4 5
rice
sorghum
physcomitrella
Total 2 7 9
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
ACALYRLELKLVDGKK at 384/477 in soybean Gm018952 (Type III)
LCALYRLELKLANGKR at 385/438 in poplar Pt014162 (Type II)
ACALYRLELKLVDGKK at 384/478 in soybean Gm036318 (Type II)
ACALYRLELKLVDGKK at 384/477 in soybean Gm018953 (Type III)
GCALYRLELKLVDKKK at 418/479 in soybean Gm033482 (Type III)
GCALYRLELKLVDKKK at 401/461 in soybean Gm016496 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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