Alias |
COL13 |
TF Classification |
|
TAIR short description |
B-box type zinc finger protein with CCT domain (.1.2) |
TAIR annotation |
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 3246 Blast hits to 2264 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3153; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_02D03 |
External link |
|
Gene Ontology (GO) |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 43565: DNA or RNA binding |
->sequence-specific DNA binding |
(F) 44212: DNA or RNA binding |
->transcription regulatory region DNA binding |
(F) 5515: protein binding |
->protein binding |
(C) 5622: other intracellular components |
->intracellular |
(C) 5634: nucleus |
->nucleus |
(P) 6355: transcription,DNA-dependent |
->regulation of transcription, DNA-templated |
(F) 8270: other binding |
->zinc ion binding |
|
miRNA/tasiRNA |
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
1 |
|
|
1 |
soybean |
|
1 |
|
|
1 |
rice |
|
|
|
|
|
sorghum |
|
1 |
|
|
1 |
physcomitrella |
|
|
|
|
|
Total |
|
3 |
|
|
3 |
|
Repression motif |
|
Repression motif in putative orthologs |
KVYPKGLALMLCLALI at 388/498 in sorghum Sb021516 (Type Ib)
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
Comment |
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