fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G02860

Alias
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDB
DATF
TAIR short description zinc ion binding (.1.2)
TAIR annotation zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); Has 2320 Blast hits to 1846 proteins in 229 species: Archae - 5; Bacteria - 112; Metazoa - 839; Fungi - 255; Plants - 88; Viruses - 6; Other Eukaryotes - 1015 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G02860.1 23
AT3G02860.2 22
Entry clone (w/o stop) RE_1216
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10030: developmental processes ->positive regulation of seed germination
(P) 1903427: other cellular processes ->negative regulation of reactive oxygen species biosynthetic process
(P) 278: other cellular processes ->mitotic cell cycle
(P) 45892: other metabolic processes ->negative regulation of transcription, DNA-templated
(C) 5634: nucleus ->nucleus
(C) 5829: cytosol ->cytosol
(P) 9737: other biological processes ->response to abscisic acid
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 2 3
rice 1 1
sorghum 1 1
physcomitrella
Total 2 2 2 6
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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