fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G15170 (ATNAC1, CUC1, ANAC054)

Alias ATNAC1, CUC1, ANAC054
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
TAIR annotation Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). (i)Cuc(/i) mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed. (.1)
Gene model
Gene model cDNA support
AT3G15170.1 5
Entry clone (w/o stop) IE_08B12
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10014: other biological processes ->meristem initiation
(P) 10072: developmental processes ->primary shoot apical meristem specification
(P) 10160: developmental processes ->formation of animal organ boundary
(P) 10223: developmental processes ->secondary shoot formation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48467: developmental processes ->gynoecium development
(P) 48527: developmental processes ->lateral root development
(P) 51782: other cellular processes ->negative regulation of cell division
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9790: developmental processes ->embryo development
(P) 9908: developmental processes ->flower development
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR164a: 3'-ACGTGCACGGGACGAAGAGGT-5'
5'--3'

miR164b: 3'-ACGTGCACGGGACGAAGAGGT-5'
5'--3'

miR164c: 3'-GCGTGCACGGGACGAAGAGGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 12 13
soybean 1 21 22
rice 1 5 6
sorghum 1 5 6
physcomitrella 1 4 5
Total 5 47 52
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
CFTVSGLNLNLGGATS at 259/334 in poplar Pt009519 (Type III)
GMQQCMDLENYWPAY at 325/334 in poplar Pt009519 (Type III)
GFTISGLNLNLGGGGA at 254/338 in soybean Gm014469 (Type III)
GVDHCMDLDNYWPSY at 329/338 in soybean Gm014469 (Type III)
TLSGSGLNLNLGASPA at 280/376 in sorghum Sb006176 (Type III)
CFTISGLNLNLGGAAS at 256/316 in poplar Pt005566 (Type III)
GMEQCMDLENYWPPY at 307/316 in poplar Pt005566 (Type III)
PFTLSGLNLNLGSSPA at 257/352 in rice Os034288 (Type III)
RAIAEIDLNKCEPWELPE at 58/373 in rice Os024821 (Type II)
RAIAEIDLNKCEPWELPD at 100/526 in sorghum Sb031540 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        strong cotyledon fusion

         abnormal sepal (direct input), 
         meristem-less (direct input), 
         fused cotyledon (direct input)


 and more...        		
       

       

        CRES-T phenotype from publication
        
fused cotyledon, meristem-less, fused stem (PMID12787253)
        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID46
           Chrysanthemum
           35S:AtCDS-SRDX
           2005-08-18
            
           no phenotype 
            
          

          

           ID50019
           Torenia
           35S:AtCDS-SRDX
           2005-08-18
            
           no phenotype 
            
          

         

         

          Comment