fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT3G20640 (bHLH123)
Alias
bHLH123
TF Classification
FioreDB
bHLH
(Click to show phylogenetic tree)
RARTF
bHLH
/ TRANSPARENT TESTA8
AtTFDB
bHLH
PlnTFDB
DATF
TAIR short description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
TAIR annotation
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G61660.1); Has 3293 Blast hits to 1784 proteins in 150 species: Archae - 0; Bacteria - 39; Metazoa - 261; Fungi - 101; Plants - 1460; Viruses - 0; Other Eukaryotes - 1432 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT3G20640.1
12
Entry clone (w/o stop)
RE_0242_x
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding
->DNA binding
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(F) 46983: protein binding
->protein dimerization activity
(F) 5515: protein binding
->protein binding
(C) 5634: nucleus
->nucleus
miRNA/tasiRNA
Target sequence
miRNA/tasiRNA sequence
Map
5'--3'
miR5643: 3'-CGTTGGTCTAGAATTTTCGGA-5'
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
soybean
1
1
rice
sorghum
physcomitrella
Total
2
2
Repression motif
Repression motif
in putative orthologs
KQDLR
SLGLCL
VPVSS at 419/451 in poplar
Pt025220
(Type Ib)
Status
Plasmid construction
-> done
Plasmid construction
-> done
Transformed
-> done
T1 seed harvested
-> done
T2 seed harvested
-> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment