fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G50700 (ATIDD2)

Alias ATIDD2
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description indeterminate(ID)-domain 2 (.1)
TAIR annotation zinc finger protein, similar to maize Indeterminate1 (ID1) (.1)
Gene model
Gene model cDNA support
AT3G50700.1 47
Entry clone (w/o stop) RE_0411
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR166a: 3'-CCCCTTACTTCGGACCAGGCT-5'
Orthologs
Type
Ia Ib II III Total
poplar 2 17 19
soybean 1 5 18 24
rice 1 3 4
sorghum 1 1
physcomitrella 1 3 4
Total 1 10 41 52
Repression motif 
AIVPHGLGLGLPCGGE at 368/452 in AT3G50700.1
Repression motif
in putative orthologs		 
ASLAAGLGLGLPCDGG at 424/505 in poplar Pt002416 (Type III)
LRGFAGLGLGLPCEDG at 396/476 in soybean Gm044710 (Type III)
ASVTAGLGLGLPCDGG at 455/536 in poplar Pt036031 (Type II)
SVAAAGLGLGLPCEDG at 445/517 in soybean Gm003166 (Type II)
ASVPAGLGLGLPCDSS at 395/478 in soybean Gm001789 (Type Ia)
HPVVDNLGLGLLCGSG at 406/473 in soybean Gm008769 (Type II)
TTVAAGLGLGLPSSDV at 417/501 in poplar Pt040442 (Type III)
HPVVDNLGLGLPCGSG at 353/421 in soybean Gm013956 (Type III)
GTAKSGLGLGLPCEDG at 414/494 in soybean Gm003165 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> not_yet
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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