fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G60580

Alias
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description C2H2-like zinc finger protein (.1)
TAIR annotation C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G45120.1); Has 2639 Blast hits to 2349 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 1624; Fungi - 13; Plants - 935; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G60580.1 9
Entry clone (w/o stop) RE_03D12_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice 1 1
sorghum
physcomitrella
Total 3 3
Repression motif 
VKQRMIDLNLPAPTEEDE at 269/288 in AT3G60580.1
Repression motif
in putative orthologs		 
NNWGFIDLNLPAPVDDDD at 299/332 in poplar Pt040126 (Type Ib)
VGDSLIDLNLPAPMDDDE at 354/416 in soybean Gm006068 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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