fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G61850 (DAG1, AtDof3,7)

Alias DAG1, AtDof3,7
TF Classification
FioreDBDOF (Click to show phylogenetic tree)
RARTFC2C2(Zn) / Dof
AtTFDBC2C2-Dof
PlnTFDBC2C2-Dof (v3.0), C2C2-Dof (v1.0)
DATFC2C2-Dof
TAIR short description dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4)
TAIR annotation Zinc finger transcription factor of the Dof family involved in the control of seed germination. (.1.2.3.4)
Gene model
Gene model cDNA support
AT3G61850.1 27
AT3G61850.2 20
AT3G61850.4 19
AT3G61850.3 18
Entry clone (w/o stop) RE_0481_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3682: other binding ->chromatin binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(P) 45892: transcription,DNA-dependent ->negative regulation of transcription, DNA-templated
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9639: response to abiotic or biotic stimulus ->response to red or far red light
(P) 9845: developmental processes ->seed germination
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR838: 3'-ACACGTTCTTCATCTTCTTTT-5'
Orthologs
Type
Ia Ib II III Total
poplar 2 2
soybean
rice
sorghum
physcomitrella
Total 2 2
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        cotyledon fusion, SAM defect

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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