fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G11060 (KNAT4)

Alias KNAT4
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / SHOOTMERISTEMLESS
AtTFDBHomeobox / KNOX II
PlnTFDBHB (v3.0), HB (v1.0)
DATF
TAIR short description KNOTTED1-like homeobox gene 4 (.1)
TAIR annotation A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root. (.1)
Gene model
Gene model cDNA support
AT5G11060.1 54
Entry clone (w/o stop) RE_0572_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(C) 5829: cytosol ->cytosol
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9416: response to abiotic or biotic stimulus ->response to light stimulus
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR394a: 3'-CCTCCACCTGTCTTACGGTT-5'
5'--3'

miR4240: 3'-GCCCAGATCAGTGAGATCGGTA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 3 15 18
rice 1 4 5
sorghum 1 1
physcomitrella 1 1 2
Total 7 24 31
Repression motif
Repression motif
in putative orthologs
TFAGHRLRLSLRITVF at 344/444 in sorghum Sb009772 (Type II)

        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
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and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project early flowering, dwarf, abnormal shaped leaf (A20288-150)

dwarf, abnormal flower (A20288-141)

Phenotype in ornamental plants

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