fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G41920

Alias
TF Classification
FioreDBGRAS (Click to show phylogenetic tree)
RARTFGRAS / SCARECROW
AtTFDBGRAS
PlnTFDBGRAS (v3.0), GRAS (v1.0)
DATFGRAS
TAIR short description GRAS family transcription factor (.1)
TAIR annotation GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT3G54220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G41920.1 30
Entry clone (w/o stop) RE_0908
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 48366: developmental processes ->leaf development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 90610: other cellular processes ->bundle sheath cell fate specification
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 4 6
soybean 1 1 4 6
rice 1 2 3
sorghum 2 2
physcomitrella 1 2 3
Total 3 5 12 20
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
KRSIDNLQLSLEPADE at 279/755 in physcomitrella Pp001557 (Type III)
TNFARRLGLSLKFHPI at 323/525 in soybean Gm035782 (Type III)
KRTDDNLQLSLEPADE at 414/891 in physcomitrella Pp001208 (Type III)
GHAPSGLSLDLDHVSN at 334/847 in poplar Pt005367 (Type III)
HASNSGLTLDLDNIVS at 273/803 in poplar Pt043556 (Type III)
KRTIDNLQLSLEPADE at 375/852 in physcomitrella Pp000890 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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