fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G66730 (IDD1, ENY)

Alias IDD1, ENY
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
TAIR annotation C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 2 (TAIR:AT3G50700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G66730.1 56
Entry clone (w/o stop) RE_0443_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10029: developmental processes ->regulation of seed germination
(P) 10431: developmental processes ->seed maturation
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
(P) 9937: signal transduction ->regulation of gibberellic acid mediated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 20 24
soybean 3 39 42
rice 1 12 13
sorghum 1 12 13
physcomitrella 1 3 4
Total 3 7 86 96
Repression motif 
LSLAPGLGLGLPCSSG at 416/500 in AT5G66730.1
Repression motif
in putative orthologs		 
LRGFAGLGLGLPCEDG at 396/476 in soybean Gm044710 (Type II)
HPVVDNLGLGLLCGSG at 406/473 in soybean Gm008769 (Type III)
HHSLLSLSLSLHNLSL at 23/856 in sorghum Sb031033 (Type III)
ASVTAGLGLGLPCDGG at 455/536 in poplar Pt036031 (Type Ia)
TTVAAGLGLGLPSSDV at 417/501 in poplar Pt040442 (Type II)
SVAAAGLGLGLPCEDG at 445/517 in soybean Gm003166 (Type III)
ASVPAGLGLGLPCDSS at 395/478 in soybean Gm001789 (Type II)
GTAKSGLGLGLPCEDG at 414/494 in soybean Gm003165 (Type III)
ASLAAGLGLGLPCDGG at 424/505 in poplar Pt002416 (Type II)
HPVVDNLGLGLPCGSG at 353/421 in soybean Gm013956 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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