fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G67180 (TOE3)

Alias TOE3
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFAP2/EREBP / APETALA2
AtTFDB
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description target of early activation tagged (EAT) 3 (.1)
TAIR annotation target of early activation tagged (EAT) 3 (TOE3); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G36920.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G67180.1 13
Entry clone (w/o stop) IE_07H03
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 9408: response to stress ->response to heat
(P) 9873: other cellular processes ->ethylene-activated signaling pathway
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR172a: 3'-TACGTCGTAGTAGTTCTAAGA-5'
5'--3'

miR172b: 3'-TACGTCGTAGTAGTTCTAAGA-5'
5'--3'

miR172c: 3'-GACGTCGTAGTAGTTCTAAGA-5'
5'--3'

miR172d: 3'-GACGTCGTAGTAGTTCTAAGA-5'
5'--3'

miR172e: 3'-TACGTCGTAGTAGTTCTAAGG-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 10 11
rice 1 1 2
sorghum 1 2 3
physcomitrella
Total 4 17 21
Repression motif 
TRNGHNLGLSLGESSS at 264/352 in AT5G67180.1
Repression motif
in putative orthologs		 
MLDLNLNADSA at 1/458 in soybean Gm052456 (Type III)
EDTKQSLDLNLGIAPP at 293/458 in soybean Gm052456 (Type III)
GAEMVLDLNVASPADSGT at 93/630 in sorghum Sb019932 (Type III)
RDAIDLDLRISQPNVQDP at 378/630 in sorghum Sb019932 (Type III)
MLDLNLNAEST at 1/485 in soybean Gm041159 (Type III)
EGGSHDLDLNLGIATP at 306/485 in soybean Gm041159 (Type III)
NAPDHNLDLSLGNATS at 347/532 in soybean Gm047359 (Type III)
MLDLNLNAEWT at 1/372 in soybean Gm030967 (Type III)
EGGSQNLDLNLGIATP at 330/372 in soybean Gm030967 (Type III)
LESMVLDLNAESPTAGSA at 76/539 in sorghum Sb004977 (Type III)
NAAAHNLDLSLGNPAS at 348/513 in poplar Pt002384 (Type III)
MLDLNLGITYS at 1/506 in poplar Pt043227 (Type III)
GGSGHNLDLSLGISQP at 338/506 in poplar Pt043227 (Type III)
MLDLNLNADSA at 1/459 in soybean Gm007394 (Type III)
EDNKQSLDLNLGLAPP at 294/459 in soybean Gm007394 (Type III)
MLLDLNVESPERSGT at 3/430 in rice Os015562 (Type III)
AIVDGDLDLDLRISQP at 284/430 in rice Os015562 (Type III)
MMLDLNLSAVSG at 2/496 in poplar Pt004986 (Type III)
GDGNQNLDLNLGIAPP at 332/496 in poplar Pt004986 (Type III)
MLDLNLTAEST at 1/476 in soybean Gm037963 (Type III)
EGGSHDLDLSLGIATP at 306/476 in soybean Gm037963 (Type III)
GDDEHNLDLSLGSSAG at 299/614 in sorghum Sb030095 (Type II)
NAPDHNLDLSLGNSTS at 183/368 in soybean Gm011901 (Type II)
VAADHNLDLSLGNLIS at 320/500 in soybean Gm001914 (Type III)
VAADHNLDLSLGNLIS at 315/497 in soybean Gm001915 (Type III)
MLDLNLNAEST at 1/388 in soybean Gm041160 (Type III)
EGGSHDLDLNLGIATP at 306/388 in soybean Gm041160 (Type III)
GDGNQNLDLKLGIAPP at 295/461 in poplar Pt043942 (Type III)
NAPDHNLDLSLGNATS at 346/531 in soybean Gm047360 (Type III)
MVLDLNVESPGGSAA at 3/436 in rice Os027482 (Type II)
NAADHNLDLSLGNPAS at 345/534 in poplar Pt037200 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment