fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G75250 (RSM3, ATRL6)

Alias RSM3, ATRL6
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBMYB-related (v3.0), MYB-related (v1.0)
DATF
TAIR short description RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
TAIR annotation RAD-like 6 (RL6); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: RAD-like 5 (TAIR:AT1G19510.1); Has 590 Blast hits to 589 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 0; Plants - 466; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G75250.1 4
AT1G75250.2 2
Entry clone (w/o stop) IE_01C07
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(C) 9507: chloroplast ->chloroplast
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 2 6 8
soybean 1 9 10
rice
sorghum 1 1
physcomitrella
Total 1 1 2 15 19
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
EKRLRNLNLNLQ at 91/97 in soybean Gm006862 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         abnormal stem (direct input)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50073
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, 12 lines 
           no phenotype 
            
          

         

         

          Comment