fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G04990

Alias
TF Classification
FioreDBC3HZnF (Click to show phylogenetic tree)
RARTFC3H-type 1(Zn) / putative zinc finger protein
AtTFDBC3H
PlnTFDBC3H (v3.0), C3H (v1.0)
DATFC3H
TAIR short description Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
TAIR annotation Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1); Has 1789 Blast hits to 1100 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 576; Fungi - 244; Plants - 789; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G04990.1 62
AT1G04990.2 33
Entry clone (w/o stop) IE_04H01
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3729: DNA or RNA binding ->mRNA binding
(F) 4518: hydrolase activity ->nuclease activity
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR834: 3'-AATGGTGGCGATGACGATGGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 2 3
rice
sorghum
physcomitrella
Total 2 3 5
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment