fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G07640 (OBP2, AtDof1. 1)

Alias OBP2, AtDof1. 1
TF Classification
FioreDBDOF (Click to show phylogenetic tree)
RARTFC2C2(Zn) / Dof
AtTFDBC2C2-Dof
PlnTFDBC2C2-Dof (v3.0), C2C2-Dof (v1.0)
DATFC2C2-Dof
TAIR short description Dof-type zinc finger DNA-binding family protein (.1.2.3)
TAIR annotation A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis. (.1.2.3)
Gene model
Gene model cDNA support
AT1G07640.1 60
AT1G07640.2 47
AT1G07640.3 43
Entry clone (w/o stop) RE_0465
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10439: other metabolic processes ->regulation of glucosinolate biosynthetic process
(P) 3002: developmental processes ->regionalization
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9611: response to stress ->response to wounding
(P) 9625: response to abiotic or biotic stimulus ->response to insect
(P) 9753: other biological processes ->response to jasmonic acid
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        stem elongation in the vegetative phase, fusion of stem and petiole, early flowering?, cotyledon morphology, lack of shoot meristem

         meristem-less (direct input), 
         early flowering (direct input), 
         fused stem (direct input)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         aerial rosette, 
         pollen defective, 
         abnormal carpel, 
         sterile or low fertility 
         (A20258-113)
         

         
         
         
         

         narrow leaf, 
         abnormal phyllotaxis, 
         too many rosettes 
         (A20585-153)
         

         loss of apical dominance, 
         short pedicel, 
         pollen defective, 
         abnormal carpel, 
         narrow leaf, 
         too many rosettes, 
         too few branching, 
         sterile or low fertility 
         (A20258-148)
         

         
         
         
         
         


        		
       

       

        Phenotype in ornamental plants


        
         

          Comment