fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G15580 (ATAUX2-27, IAA5)

Alias ATAUX2-27, IAA5
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFAux/IAA
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description AUXIN-INDUCIBLE 2-27, indole-3-acetic acid inducible 5 (.1)
TAIR annotation auxin induced protein (.1)
Gene model
Gene model cDNA support
AT1G15580.1 5
Entry clone (w/o stop) IE_01D02
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10583: other biological processes ->response to cyclopentenone
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9733: other biological processes ->response to auxin
(P) 9734: other cellular processes ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 9 10
soybean 1 9 10
rice
sorghum
physcomitrella
Total 2 18 20
Repression motif
GLEITELRLGLPGDIV at 13/163 in AT1G15580.1
Repression motif
in putative orthologs
LEITTELRLGLPGGEL at 13/187 in soybean Gm040797 (Type III)
HKGYSELALALEKFFG at 104/187 in soybean Gm040797 (Type III)
LTNEHGLSLNLKETEL at 10/239 in soybean Gm028045 (Type III)
FSETVDLKLNLQTKED at 47/239 in soybean Gm028045 (Type III)
NLKETELRLGLPGTGC at 17/207 in poplar Pt040947 (Type III)
SFKETELTLGLPGESR at 23/220 in poplar Pt028468 (Type III)
NLKATELRLGLPGSDE at 17/199 in poplar Pt039373 (Type III)
GLEITELRLGLPDAEH at 12/187 in soybean Gm017314 (Type II)
HKGYSDLALALDKLFG at 104/187 in soybean Gm017314 (Type II)
GFEETELRLGLPGNVG at 17/254 in soybean Gm007181 (Type III)
SATTVDLMLNLSSKEA at 58/254 in soybean Gm007181 (Type III)
NLKETELRLGLPGTGC at 17/226 in poplar Pt040946 (Type III)
NLDATELRLGLPGTAT at 13/203 in poplar Pt015555 (Type III)
GLEITELRLGLPDAEH at 12/195 in soybean Gm022022 (Type III)
HKGYSDLALALDKLFG at 112/195 in soybean Gm022022 (Type III)
NLKATELRLGLPGTEE at 18/194 in soybean Gm055370 (Type III)
NLKATELRLGLPGTSC at 122/297 in poplar Pt035517 (Type III)
NLKATELRLGLPGCDE at 15/206 in soybean Gm007180 (Type III)
LEITTELRLGLPGGEL at 13/189 in soybean Gm038311 (Type III)
NLEATELRLGLPGSDE at 18/202 in soybean Gm004012 (Type III)
NLKATELRLGLPGSDE at 13/195 in poplar Pt002787 (Type III)
NLKATELRLGLPGCDE at 14/204 in soybean Gm052264 (Type III)
GLEITELRLGLPGSDD at 11/184 in poplar Pt010911 (Type III)
NLEATELRLGLPGTAT at 13/201 in poplar Pt001236 (Type III)

        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants

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