fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G43950 (ARF23)

Alias ARF23
TF Classification
FioreDBARF (Click to show phylogenetic tree)
RARTFARF / MONOPTEROS/ARF5
AtTFDBARF
PlnTFDBABI3VP1 (v3.0), ABI3VP1 (v1.0)
DATFABI3-VP1
TAIR short description auxin response factor 23 (.1)
TAIR annotation auxin response factor 23 (ARF23); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: auxin response factor 12 (TAIR:AT1G34310.1); Has 972 Blast hits to 962 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 972; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G43950.1 0
Entry clone (w/o stop) IE_02C08_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9734: other cellular processes ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 21 22
soybean 1 14 15
rice 1 7 8
sorghum 1 4 5
physcomitrella
Total 4 46 50
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
EPSETIDLQSLEPAQEFW at 379/699 in rice Os001180 (Type III)
EPAMFRLFGVDLMKC at 525/699 in rice Os001180 (Type III)
KDDNYKLFGVSLFRN at 573/725 in poplar Pt010327 (Type III)
KDDNYKLFGVSLFRN at 554/780 in poplar Pt010325 (Type III)
KDDNYKLFGVSLFRN at 573/804 in poplar Pt010323 (Type III)
EPSETIDLQSLEPAQEFW at 379/699 in rice Os001181 (Type III)
EPAMFRLFGVDLMKC at 525/699 in rice Os001181 (Type III)
PGVPSSLSLNLLDSNL at 549/851 in soybean Gm019793 (Type III)
SGVPSSLSLNLLDSNT at 556/858 in soybean Gm013593 (Type III)
KDDNYKLFGVSLFRN at 573/799 in poplar Pt010324 (Type III)
SGVPSSLSLNLLDSNT at 556/858 in soybean Gm013592 (Type III)
KDDNYKLFGVSLFRN at 542/768 in poplar Pt010326 (Type III)
SGVPSSLSLNLLDSNT at 556/802 in soybean Gm013594 (Type III)
SIMSPGLSLKLSESNS at 555/854 in poplar Pt023628 (Type III)
KDDNYKLFGVSLFRN at 573/671 in poplar Pt010328 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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