fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G48195

Alias
TF Classification
FioreDBC3HZnF (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBC3H (v3.0), C3H (v1.0)
DATFC3H
TAIR short description Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
TAIR annotation Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G63260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G48195.1 4
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 7 8
soybean 1 27 28
rice 1 13 14
sorghum 1 5 6
physcomitrella 1 5 6
Total 5 57 62
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
VGVWWSLQLALALRGL at 70/500 in physcomitrella Pp023832 (Type II)
GLEGPMLRLGLDGGGE at 41/646 in sorghum Sb024977 (Type III)
RGVPGSLDLALLCRRR at 60/617 in sorghum Sb031605 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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