Alias |
|
TF Classification |
FioreDB | MYB (Click to show phylogenetic tree) |
RARTF | MYB superfamily / CIRCADIAN CLOCK ASSOCIATED 1 |
AtTFDB | |
PlnTFDB | MYB (v3.0), MYB (v1.0) |
DATF | MYB |
|
TAIR short description |
Duplicated homeodomain-like superfamily protein (.1) |
TAIR annotation |
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G08520.1); Has 2158 Blast hits to 2138 proteins in 225 species: Archae - 0; Bacteria - 22; Metazoa - 311; Fungi - 95; Plants - 1498; Viruses - 2; Other Eukaryotes - 230 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_02G05 |
External link |
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Gene Ontology (GO) |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(P) 46686: other biological processes |
->response to cadmium ion |
(F) 5515: protein binding |
->protein binding |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: other metabolic processes |
->regulation of transcription, DNA-templated |
(P) 9651: response to abiotic or biotic stimulus |
->response to salt stress |
(P) 9733: other biological processes |
->response to auxin |
(P) 9739: other biological processes |
->response to gibberellin |
(P) 9751: other biological processes |
->response to salicylic acid |
(P) 9753: other biological processes |
->response to jasmonic acid |
|
miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5' |
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|
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Orthologs |
|
Repression motif |
|
Repression motif in putative orthologs |
VTLSQGLQLKLVMHRS at 207/476 in sorghum Sb030230 (Type III)
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
|
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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