fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G52880 (ATNAM, NAM, ANAC018, NARS2)

Alias ATNAM, NAM, ANAC018, NARS2
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description NAC-REGULATED SEED MORPHOLOGY 2, Arabidopsis NAC domain containing protein 18, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
TAIR annotation Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo. (.1)
Gene model
Gene model cDNA support
AT1G52880.1 36
Entry clone (w/o stop) IE_08C01_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(P) 45995: developmental processes ->regulation of embryonic development
(P) 48317: developmental processes ->seed morphogenesis
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 80060: developmental processes ->integument development
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR4228: 3'-GTGGTGGCAAAGCGTAGGCTG-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 17 18
soybean 1 26 27
rice 1 8 9
sorghum 1 10 11
physcomitrella 2 6 8
Total 1 5 67 73
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
PKWNDDLDLKLENAFD at 240/291 in soybean Gm010412 (Type III)
NNDDYDLGLQLENAFD at 244/295 in soybean Gm015354 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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