fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G28550 (TOE1, RAP2.7)

Alias TOE1, RAP2.7
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFAP2/EREBP / APETALA2
AtTFDBAP2-EREBP
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
TAIR annotation related to AP2.7 (RAP2.7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: target of early activation tagged (EAT) 2 (TAIR:AT5G60120.1); Has 4895 Blast hits to 4529 proteins in 234 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 4802; Viruses - 9; Other Eukaryotes - 56 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G28550.1 28
AT2G28550.3 20
AT2G28550.2 20
Entry clone (w/o stop) RE_0068_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10228: developmental processes ->vegetative to reproductive phase transition of meristem
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 9873: signal transduction ->ethylene-activated signaling pathway
(P) 9887: developmental processes ->animal organ morphogenesis
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR172a: 3'-TACGTCGTAGTAGTTCTAAGA-5'
5'--3'

miR172b: 3'-TACGTCGTAGTAGTTCTAAGA-5'
5'--3'

miR172c: 3'-GACGTCGTAGTAGTTCTAAGA-5'
5'--3'

miR172d: 3'-GACGTCGTAGTAGTTCTAAGA-5'
5'--3'

miR172e: 3'-TACGTCGTAGTAGTTCTAAGG-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean 1 2 1 4
rice
sorghum
physcomitrella
Total 1 2 1 4
Repression motif 
MLDLNLNADSP at 0/449 in AT2G28550.1
MLDLNLNADSP at 0/381 in AT2G28550.2
MLDLNLNADSP at 0/464 in AT2G28550.3
Repression motif
in putative orthologs		 
MLDLNLNAEWT at 1/478 in soybean Gm033046 (Type Ia)
EGGGQNLDLNLGIATP at 311/478 in soybean Gm033046 (Type Ia)
MLDLNLNAEWT at 1/477 in soybean Gm033047 (Type II)
EGGGQNLDLNLGIATP at 311/477 in soybean Gm033047 (Type II)
MLDLNLNAEWT at 1/372 in soybean Gm030967 (Type II)
EGGSQNLDLNLGIATP at 330/372 in soybean Gm030967 (Type II)
MLDLNLNAEWT at 1/357 in soybean Gm030969 (Type III)
EGGSQNLDLNLGIATP at 315/357 in soybean Gm030969 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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