fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G36080 (ABS2, NGAL1)

Alias ABS2, NGAL1
TF Classification
FioreDBB3 (Click to show phylogenetic tree)
RARTFARF / MONOPTEROS/ARF5
AtTFDBRAV
PlnTFDBABI3VP1 (v3.0), ABI3VP1 (v1.0)
DATFABI3-VP1
TAIR short description AP2/B3-like transcriptional factor family protein (.1.2)
TAIR annotation Encodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity. (.1), Encodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity. (.2)
Gene model
Gene model cDNA support
AT2G36080.1 60
AT2G36080.2 23
Entry clone (w/o stop) IE_02A03
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45892: other cellular processes ->negative regulation of transcription, DNA-templated
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 80167: response to abiotic or biotic stimulus ->response to karrikin
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 2 1 4
rice 2 2
sorghum 1 1 2
physcomitrella
Total 3 8 1 12
Repression motif 
NSKTLRLFGVNMECQ at 183/244 in AT2G36080.1
Repression motif
in putative orthologs		 
SSRQLRLFGVNLDCG at 273/322 in sorghum Sb028463 (Type Ia)
PSRRLRLFGVNLDCG at 234/279 in rice Os037663 (Type II)
PSRRLRLFGVNLDCG at 213/258 in rice Os037664 (Type II)
NSKRLRLFGVNLECQ at 298/353 in poplar Pt007927 (Type II)
NSKRLRLFGVNLECQ at 298/363 in poplar Pt007926 (Type Ia)
NSRRLRLFGVNLECQ at 176/241 in poplar Pt044322 (Type II)
SSRVLRLFGVNMECQ at 275/344 in soybean Gm004534 (Type II)
SGRVLRLFGVNMECQ at 137/188 in soybean Gm007617 (Type II)
SGRVLRLFGVNMECQ at 174/224 in soybean Gm052668 (Type Ia)
PSRKLRLFGVNLDCG at 226/270 in sorghum Sb016626 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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