fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G41940 (ZFP8)

Alias ZFP8
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description zinc finger protein 8 (.1)
TAIR annotation Encodes a zinc finger protein containing only a single zinc finger. (.1)
Gene model
Gene model cDNA support
AT2G41940.1 53
Entry clone (w/o stop) RE_0403_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10026: other cellular processes ->trichome differentiation
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(F) 8270: other binding ->zinc ion binding
(P) 9736: other cellular processes ->cytokinin-activated signaling pathway
(P) 9738: other cellular processes ->abscisic acid-activated signaling pathway
(P) 9740: other cellular processes ->gibberellic acid mediated signaling pathway
(P) 9788: other cellular processes ->negative regulation of abscisic acid-activated signaling pathway
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean
rice 1 1
sorghum 1 1
physcomitrella
Total 3 3
Repression motif 
VQDHVSLDLHL at 251/257 in AT2G41940.1
Repression motif
in putative orthologs		 
QKEGVSLDLHL at 274/279 in rice Os010094 (Type Ib)
VQDRVSLDLHL at 228/233 in poplar Pt044683 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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