fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G42830 (AGL5, SHP2)

Alias AGL5, SHP2
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / SHATTERPROOF1
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2)
TAIR annotation AGAMOUS (AG)-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG). (.1), AGAMOUS (AG)-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG). (.2)
Gene model
Gene model cDNA support
AT2G42830.1 56
AT2G42830.2 51
Entry clone (w/o stop) IE_08C04
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 40008: other biological processes ->regulation of growth
(P) 45944: other cellular processes ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(P) 48440: developmental processes ->carpel development
(P) 48481: developmental processes ->plant ovule development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 977: DNA or RNA binding ->RNA polymerase II regulatory region sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 4 13 18
rice 3 3
sorghum 1 2 3
physcomitrella 1 1
Total 1 1 9 19 30
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
QTSQTSLHLGLFPKSH at 290/331 in physcomitrella Pp037718 (Type Ib)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        low seed yeild

         abnormal petal (direct input), 
         abnormal carpel (direct input), 
         sterile or low fertility (direct input), 
         short stamen (direct input), 
         abnormal stamen (direct input), 
         abnormal sepal (direct input), 
         abnormal flower (direct input)


 and more...        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID25
           Chrysanthemum
           35S:AtCDS-SRDX
           2005-08-18
            
           no phenotype 
            
          

         

         

          Comment