fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G46870 (NGA1)

Alias NGA1
TF Classification
FioreDBB3 (Click to show phylogenetic tree)
RARTFARF / MONOPTEROS/ARF5
AtTFDBRAV
PlnTFDBABI3VP1 (v3.0), ABI3VP1 (v1.0)
DATFABI3-VP1
TAIR short description NGATHA1, AP2/B3-like transcriptional factor family protein (.1)
TAIR annotation NGATHA1 (NGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G61970.1); Has 1372 Blast hits to 1367 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1372; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G46870.1 26
Entry clone (w/o stop) RE_0004
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 1901371: developmental processes ->regulation of leaf morphogenesis
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48366: developmental processes ->leaf development
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9908: developmental processes ->flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 5 6
soybean 2 2 4
rice 1 1 2
sorghum 1 1
physcomitrella
Total 3 7 3 13
Repression motif 
AGKRLRLFGVDMECG at 240/310 in AT2G46870.1
Repression motif
in putative orthologs		 
VGKRLRLFGVNMECP at 335/405 in poplar Pt016365 (Type II)
AGKRLRLFGVNMDCP at 343/413 in poplar Pt038767 (Type Ia)
SGKRLRLFGVNMECA at 333/413 in soybean Gm053391 (Type II)
ASKRVRLFGVNLDCA at 432/486 in sorghum Sb022430 (Type Ia)
GKARCSLNLDL at 481/486 in sorghum Sb022430 (Type Ia)
AAKRLRLFGVNMDCP at 350/445 in poplar Pt032938 (Type II)
SGKRLRLFGVNMECA at 283/406 in soybean Gm008337 (Type II)
AGKRLRLFGVNMECA at 303/377 in soybean Gm017484 (Type III)
VGKRLRLFGVNMECP at 258/328 in poplar Pt016367 (Type II)
AAKRVRLFGVNLDNP at 330/412 in rice Os009289 (Type III)
RDAHSALDLDL at 407/412 in rice Os009289 (Type III)
PSKRVRLFGVNLDCA at 262/311 in rice Os010946 (Type Ia)
GKARCSLNLDL at 306/311 in rice Os010946 (Type Ia)
VGKRLRLFGVNMECP at 258/328 in poplar Pt016366 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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