fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G12977

Alias
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBNAC (v3.0), NAC (v1.0)
DATF
TAIR short description NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
TAIR annotation NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 1 (TAIR:AT1G56010.2); Has 2993 Blast hits to 2988 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2989; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G12977.1 12
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR164a: 3'-ACGTGCACGGGACGAAGAGGT-5'
5'--3'

miR164b: 3'-ACGTGCACGGGACGAAGAGGT-5'
5'--3'

miR164c: 3'-GCGTGCACGGGACGAAGAGGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1 2
rice 1 1
sorghum 1 1
physcomitrella
Total 4 1 5
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> 

          
Plasmid construction -> 

          
Transformed -> 

          
T1 seed harvested -> 

          
T2 seed harvested -> 

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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