fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G15210 ( ATERF4, RAP2.5, ATERF-4)

Alias ATERF4, RAP2.5, ATERF-4
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFAP2/EREBP / AINTEGUMENTA
AtTFDBAP2-EREBP
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1)
TAIR annotation Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation. (.1)
Gene model
Gene model cDNA support
AT3G15210.1 107
Entry clone (w/o stop) RE_04A11_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10105: other cellular processes ->negative regulation of ethylene-activated signaling pathway
(P) 10200: other biological processes ->response to chitin
(C) 16604: other intracellular components ->nuclear body
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45892: transcription,DNA-dependent ->negative regulation of transcription, DNA-templated
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9723: other biological processes ->response to ethylene
(P) 9737: other biological processes ->response to abscisic acid
(P) 9864: other cellular processes ->induced systemic resistance, jasmonic acid mediated signaling pathway
(P) 9873: other cellular processes ->ethylene-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice 1 1
sorghum 1 1
physcomitrella
Total 4 4
Repression motif 
GNVPPQLELSLGGGGG at 125/222 in AT3G15210.1
KRSQLLDLDLNLPPPSEQ at 208/222 in AT3G15210.1
Repression motif
in putative orthologs		 
NRRVLLDLDLNVPPLPEV at 180/193 in soybean Gm034499 (Type Ib)
MPLPPTLDLDLFHRAA at 128/235 in rice Os004257 (Type Ib)
NKAAAFDLDLNRPPPVEN at 223/235 in rice Os004257 (Type Ib)
HHDNKGLSLDLDLNLP at 208/224 in poplar Pt032466 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment