fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G24120

Alias
TF Classification
FioreDBGARP (Click to show phylogenetic tree)
RARTFGARP / G2-like
AtTFDBG2-like
PlnTFDBG2-like (v3.0), G2-like (v1.0)
DATFGARP-G2-like
TAIR short description Homeodomain-like superfamily protein (.1.2)
TAIR annotation Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G13640.1); Has 1710 Blast hits to 1694 proteins in 69 species: Archae - 0; Bacteria - 2; Metazoa - 34; Fungi - 0; Plants - 1651; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G24120.1 50
AT3G24120.2 40
Entry clone (w/o stop) RE_02B08
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10628: other metabolic processes ->positive regulation of gene expression
(P) 16036: response to stress ->cellular response to phosphate starvation
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 1
rice 1 1
sorghum
physcomitrella 1 1
Total 3 1 2 6
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
MQMSEQLQLQLEVQQR at 152/310 in physcomitrella Pp014810 (Type Ib)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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