fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G24140 (bHLH097, FMA)

Alias bHLH097, FMA
TF Classification
FioreDBbHLH (Click to show phylogenetic tree)
RARTFbHLH / TRANSPARENT TESTA8
AtTFDBbHLH
PlnTFDBbHLH (v3.0), bHLH (v1.0)
DATFbHLH
TAIR short description FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
TAIR annotation Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell. (.1)
Gene model
Gene model cDNA support
AT3G24140.1 14
Entry clone (w/o stop) IE_04F05_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10052: developmental processes ->guard cell differentiation
(P) 10377: developmental processes ->guard cell fate commitment
(P) 10444: other cellular processes ->guard mother cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45597: other cellular processes ->positive regulation of cell differentiation
(P) 45893: transcription,DNA-dependent ->positive regulation of transcription, DNA-templated
(F) 46983: protein binding ->protein dimerization activity
(P) 51782: other cellular processes ->negative regulation of cell division
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 61086: other metabolic processes ->negative regulation of histone H3-K27 methylation
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR169b: 3'-AGGCCGTTCAGTAGGAACCGA-5'
5'--3'

miR169d: 3'-GCCGTTCAGTAGGAACCGAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice
sorghum 1 1
physcomitrella 1 1
Total 2 2 2 6
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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