fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G25730 (EDF3)

Alias EDF3
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFARF / NPH4/ARF7
AtTFDBRAV
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description ethylene response DNA binding factor 3 (.1)
TAIR annotation ethylene response DNA binding factor 3 (EDF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: cotyledon, hypocotyl, root, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to ABI3/VP1 1 (TAIR:AT1G13260.1); Has 6965 Blast hits to 6489 proteins in 279 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6930; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G25730.1 12
Entry clone (w/o stop) RE_0091_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9873: other cellular processes ->ethylene-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 3 4
rice 1 2 3
sorghum 1 2 3
physcomitrella 1 1 2
Total 5 9 14
Repression motif 
TGRVMRLFGVDISLN at 299/333 in AT3G25730.1
Repression motif
in putative orthologs		 
EPRVVRLFGVDIAGG at 320/365 in rice Os000364 (Type III)
SGKMVRLFGVDLLKL at 297/342 in soybean Gm055124 (Type III)
TSSGTRLFGVDLELA at 738/1017 in physcomitrella Pp024957 (Type III)
PVQMVRLFGVNIFNV at 357/401 in poplar Pt035978 (Type III)
PVQMVRLFGVNLLKL at 311/351 in soybean Gm028283 (Type III)
EARVVRLFGVDIAGD at 418/557 in sorghum Sb024795 (Type III)
PVKAVRLFGVDLLTT at 374/428 in sorghum Sb032995 (Type II)
ARVVVKLFGVDIAGD at 305/317 in rice Os000363 (Type III)
SMAGSCLNLDLQHSPL at 625/951 in physcomitrella Pp021776 (Type II)
TSSGTRLFGVDLERA at 691/951 in physcomitrella Pp021776 (Type II)
PIQMVRLFGVNILKL at 351/401 in soybean Gm003570 (Type III)
PVKAVRLFGVDLLTA at 347/393 in rice Os003376 (Type II)
PIQMVRLFGVNIFNV at 325/369 in poplar Pt042964 (Type II)
PIQMVRLFGVNILKL at 335/384 in soybean Gm001006 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project meristem, leaf expansion, low fertility
abnormal shaped leaf (A22046), narrow leaf (direct input), abnormal phyllotaxis (direct input, A22046), thin stem (A22046), too large leaf (direct input), wide leaf (A22046), too many branchings (A22046), sterile or low fertility (direct input), too many rosettes (A22046), short petiole (A22046)
CRES-T phenotype from publication
CRES-T phenotype from bulk project indehiscent silique (A20420-13)
Phenotype in ornamental plants
Comment