fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G10240

Alias
TF Classification
FioreDBCO (Click to show phylogenetic tree)
RARTFC2C2(Zn) / CO-like
AtTFDB
PlnTFDBOrphans (v3.0), Orphans (v1.0)
DATF
TAIR short description B-box zinc finger family protein (.1)
TAIR annotation B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: petal, leaf whorl, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: light-regulated zinc finger protein 1 (TAIR:AT1G78600.1); Has 1675 Blast hits to 1305 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 1598; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT4G10240.1 3
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
(P) 9640: response to abiotic or biotic stimulus ->photomorphogenesis
(F) 989: other molecular functions ->transcription factor activity, transcription factor binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 4 5
rice 1 1 2
sorghum 1 1
physcomitrella
Total 4 6 10
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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