fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G11660 (AT-HSFB2B, HSFB2B)

Alias AT-HSFB2B, HSFB2B
TF Classification
FioreDBHSF (Click to show phylogenetic tree)
RARTFHSF
AtTFDBHSF
PlnTFDBHSF (v3.0), HSF (v1.0)
DATFHSF
TAIR short description HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1)
TAIR annotation member of Heat Stress Transcription Factor (Hsf) family (.1)
Gene model
Gene model cDNA support
AT4G11660.1 18
Entry clone (w/o stop) RE_0949_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45892: transcription,DNA-dependent ->negative regulation of transcription, DNA-templated
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5025: 3'-GAATGACATATATACATTCAC-5'
5'--3'

miRN129: 3'-CCATTGTGTTGTTATTCAGTA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 1 3 5
rice 1 2 3
sorghum 1 1
physcomitrella
Total 3 1 3 5 12
Repression motif 
EDLTPRLFGVSIGVK at 313/377 in AT4G11660.1
Repression motif
in putative orthologs		 
EAEVPKLFGVSIGLK at 286/355 in soybean Gm029607 (Type Ia)
GMMSAKLFGVSIGRK at 310/390 in rice Os032421 (Type II)
EEMNPKLFGVAIGKK at 234/300 in soybean Gm054819 (Type III)
EEMNPKLFGVAIGAK at 253/324 in soybean Gm024883 (Type III)
SEVSPRLFGVSIGFK at 284/343 in poplar Pt028610 (Type Ia)
EAEVPKLFGVSIGLK at 286/355 in soybean Gm029606 (Type II)
PDPSARLFGVSIGLK at 319/414 in rice Os034528 (Type II)
PDQAARLFGVSIGLK at 564/1013 in sorghum Sb023593 (Type Ib)
PDQAARLFGVSIGLK at 894/1013 in sorghum Sb023593 (Type Ib)
PDPSARLFGVSIGLK at 319/454 in rice Os034529 (Type Ia)
RSSSPGLSLELLDENE at 165/286 in poplar Pt026513 (Type III)
LIPNPKLFGVAIGAK at 270/348 in soybean Gm045241 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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