fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G35280 (DAZ2)

Alias DAZ2
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
TAIR annotation C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G17180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT4G35280.1 7
Entry clone (w/o stop) IE_03F05
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(P) 48235: other cellular processes ->pollen sperm cell differentiation
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1
rice 1 1
sorghum 1 1
physcomitrella
Total 1 3 1 5
Repression motif 
MISGALDLNVPPTIQDL at 256/284 in AT4G35280.1
DTSGCCLDLRLGL at 276/284 in AT4G35280.1
Repression motif
in putative orthologs		 
KEGSVLDLNLPAPVEDES at 290/318 in poplar Pt019083 (Type II)
SFYSSGLTLDLRLGL at 309/318 in poplar Pt019083 (Type II)
AKEGCGLDLNLPAPME at 268/297 in poplar Pt021511 (Type Ia)
SSYSSGLTLDLRLCL at 288/297 in poplar Pt021511 (Type Ia)
PHHDTTLTLSLALPPP at 28/268 in sorghum Sb016353 (Type Ib)
AAPATTLDLNLPPPGM at 233/268 in sorghum Sb016353 (Type Ib)
GSLDATLDLKLGF at 261/268 in sorghum Sb016353 (Type Ib)
RHDDTTLTLSLAPPAA at 35/263 in rice Os007482 (Type Ib)
ATAATALDLNLNLPPP at 230/263 in rice Os007482 (Type Ib)
GGSNETLDLNLGLHR at 254/263 in rice Os007482 (Type Ib)
FSSPLALDLRLGL at 230/237 in soybean Gm005714 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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