fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G15840 (FG, CO)

Alias FG, CO
TF Classification
FioreDBCO (Click to show phylogenetic tree)
RARTFC2C2(Zn) / CO-like
AtTFDBC2C2-CO-like
PlnTFDBC2C2-CO-like(.1), Orphans(.2) (v3.0), C2C2-CO-like (v1.0)
DATFC2C2-CO-like
TAIR short description CONSTANS, B-box type zinc finger protein with CCT domain (.1.2)
TAIR annotation Encodes a protein showing similarities to zinc finger transcription factors, involved in regulation of flowering under long days. Acts upstream of FT and SOC1. (.1.2)
Gene model
Gene model cDNA support
AT5G15840.1 20
AT5G15840.2 12
Entry clone (w/o stop) RE_1102_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10018: response to abiotic or biotic stimulus ->far-red light signaling pathway
(P) 10218: response to abiotic or biotic stimulus ->response to far red light
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 7623: other biological processes ->circadian rhythm
(F) 8270: other binding ->zinc ion binding
(P) 9908: developmental processes ->flower development
(P) 9909: developmental processes ->regulation of flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 1 2
rice
sorghum
physcomitrella
Total 2 3 5
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         late flowering (A20754, direct input), 
         serrated leaf (A20754, direct input), 
         rough surface leaf (A20754, direct input)


 and more...        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         late flowering 
         (A20313-119)
         

         
         

         slow growth 
         (A20301-20)
         

         late flowering, 
         abnormal shaped leaf 
         (A20695-44)
         

         serrated leaf 
         (A20301-34)
         

         
         
         
         
         

         too many rosettes, 
         late flowering, 
         short petiole 
         (A20302-67)
         

         
         
         
         

         rough surface leaf 
         (A20301-26)
         

         
         
         
         

         too many rosettes, 
         short petiole, 
         late flowering 
         (A20302-68)
         

         
         
         
         

         rough surface leaf, 
         abnormal shaped leaf 
         (A20302-80)
         

         
         

         too many rosettes, 
         abnormal shaped leaf, 
         late flowering 
         (A20302-81)
         

         
         
         

         abnormal shaped leaf, 
         too many rosettes, 
         late flowering 
         (A20313-114)
         

         
         
         


        		
       

       

        Phenotype in ornamental plants


        
         

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